PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22204.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 387aa    MW: 40980.1 Da    PI: 7.383
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22204.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.62.2e-38551712115
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...kaaksaa. 95 
                 +++k++ +++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLl+qa+pai+++tgt++++a+++  ++s +ss+s+ s++   +   +++ 
  KFK22204.1  55 TTAKRPAKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLNQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSKSapiS---FHNs 150
                 6789*****************************************************************99999999999999777774441...3332 PP

         TCP  96 .kskksqksaasalnlakesr 115
                   +  +++++++ ++ ++ ++
  KFK22204.1 151 aLKLYDETHTNNSSSSDDPTS 171
                 122222222332333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.33561115IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-3661164IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MESHKNNNNQ SNTDHHHQQT TGSAHLVPFM GPNSGSTSLT TTTNAAADTV SVPKTTAKRP  60
AKDRHIKVDG RGRRIRMPAI CAARVFQLTR ELQHKSDGET IEWLLNQAEP AIIAATGTGT  120
IPANFSTLNV SLRSSGSTLS KSAPISFHNS ALKLYDETHT NNSSSSDDPT SRKFIGRAAQ  180
NAAVFGFQQQ LYPPHHIMSH DPNSLPKSFR EEDLFKDPNS FHHDNTGGSS SPKPGSEGSD  240
QDPGSTRSRT QNMIPPMWAV AAPTPTSANG GSAFWMLPVG GGGGPPAQDP SQHMWAFNPG  300
HYPGRIGSVQ LGSMLVQQAA VGGQQLGLNV VDSNNLGMFS GGEGGYGGGG SGRVCLGMSL  360
EQKDQLHEHH QVTDATGDQN PTIAGSP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397460.10.0hypothetical protein EUTSA_v10001860mg
SwissprotQ9LQF01e-153TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A087FX520.0A0A087FX52_ARAAL; Uncharacterized protein
STRINGfgenesh2_kg.1__3639__AT1G35560.11e-152(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.11e-125TCP family protein